PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G267200.1.p
Common NamePRUPE_ppa017162mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 426aa    MW: 43709.4 Da    PI: 8.0499
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G267200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022212.5e-682063663153
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92 
                         + t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq +  aa   a +++ +++++k++r l  ++q+++s+t++s
  Prupe.4G267200.1.p 206 ASTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSGAAGGGAGSNSgSTSSAKKPR-LIGASQTTTSHTSTS 295
                         5789************************************************99999999998884445555555.5699999******** PP

              DUF702  93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                         +++++++ +tss          lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e
  Prupe.4G267200.1.p 296 NTTPPRSYDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGVE 366
                         **********999********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.1E-62208366IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.8E-27210252IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.9E-30318365IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MWPSSGPPSR PLPYSHLPPE MAGMVGLRDV FVVAPAAAYH HNNHHHLHHH HHDPNLLSPS  60
SDPHHSINAS TNPATALGVG VGVGVIPLLT TTPCLAPPNI SNVDDDEDNN AHTPTGMSMG  120
MGMGMGMGMG MSMSMGMMSS GQHRNNRSAG GGGGIQLWQQ PQPHFFKKTP HDLAATSLGG  180
THLVQGGGGG VGNNVMNSGS AAASGASTMT CQDCGNQAKK DCTHRRCRTC CKSRGFDCAT  240
HVKSTWVPAA RRRERQLMSG AAGGGAGSNS GSTSSAKKPR LIGASQTTTS HTSTSNTTPP  300
RSYDTSSSHQ DAGFKESLPG QVRAPAVFKC VRVTAVEDGD DEYAYQAVVK IGGHVFKGFL  360
YDQGVEGREG FPNISELHLG GGGGTSGGGN GGRNGASSPI LDSSDVYGAS SGGLLGGSNF  420
GNPIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007214025.10.0hypothetical protein PRUPE_ppa017162mg
TrEMBLM5WND70.0M5WND7_PRUPE; Uncharacterized protein
STRINGVIT_06s0009g03450.t011e-118(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-74Lateral root primordium (LRP) protein-related